Plant transposable elements: impact on genome structure and function / ed. by M.-A.Grandbastien, J.M.Casacuberta. - Berlin; Heidelberg: Springer Science+Business Media, 2012. - xii, 330 p.: ill. - (Topics in current genetics; 24). - Bibliogr. at the end of the chapters. - Ind.: p.325-330. - ISBN 978-3-642-31841-2  Место хранения:   02 | Отделение ГПНТБ СО РАН | Новосибирск

Оглавление / Contents

1 So Many Repeats and So Little Time: How to Classify Transposable Elements ........................................ 1 Thomas Wicker 2 Transposable Element Annotation in Completely Sequenced Eukaryote Genomes ........................................... 17 Timothee Flutre, Emmanuelle Permal, and Hadi Quesneville 3 Using Nextgen Sequencing to Investigate Genome Size Variation and Transposable Element Content .................. 41 Concepcion Muñoz-Diez, Clémentine Vitte, Jeffrey Ross- Ibarra, Brandon S. Gaut, and Maud I. Tenaillon 4 Genome-Wide Analysis of Transposition Using Next Generation Sequencing Technologies .......................... 59 Moaine Elbaidouri and Olivier Panaud 5 Hitching a Ride: Nonautonomous Retrotransposons and Parasitism as a Lifestyle ................................... 71 Alan H. Schulman 6 Plant Endogenous Retroviruses? A Case of Mysterious ORFs .... 89 Howard M. Laten and Garen D. Gaston 7 MITEs, Miniature Elements with a Major Role in Plant Genome Evolution ........................................... 113 Helene Guermonprez, Elizabeth Hénaff, Marta Cifuentes, and Josep M. Casacuberta 8 Glue for Jumping Elements: Epigenetic Means for Controlling Transposable Elements in Plants ................ 125 Thierry Pélissier and Olivier Mathieu 9 Responses of Transposable Elements to Polyploidy ........... 147 Christian Parisod and Natacha Senerchia 10 Noise or Symphony: Comparative Evolutionary Analysis of Sugarcane Transposable Elements with Other Grasses ...... 169 Nathalia de Setta, Cushla J. Metcalfe, Guilherme M.Q. Cruz, Edgar A. Ochoa, and Marie-Anne Van Sluys 11 Helitron Proliferation and Gene-Fragment Capture ........... 193 Yubin Li and Hugo K. Dooner 12 Transposable Element Exaptation in Plants .................. 219 Douglas R. Hoen and Thomas E. Bureau 13 SINE Exaptation as Cellular Regulators Occurred Numerous Times During Eukaryote Evolution .................. 253 Jean-Marc Deragon 14 LTR Retrotransposons as Controlling Elements of Genome Response to Stress? ........................................ 273 Quynh Trang Bui and Marie-Angele Grandbastien 15 Rider Transposon Insertion and Phenotypic Change in Tomato ..................................................... 297 Ning Jiang, Sofia Visa, Shan Wu, and Esther van der Knaap 16 Retrotransposons and the Eternal Leaves .................... 313 Antonella Furini Index ......................................................... 325