Preface ......................................................... v
Contributors ................................................. xiii
Chapter 1. Scale-Free Networks in Biology ....................... 1
Eivind Almaas, Alexei Vazquez and Albert-
Laszlo Barabasi
Chapter 2. Modularity in Biological Networks ................... 21
Ricard V. Sole, Sergi Valverde and Carlos
Rodriguez-Caso
Chapter 3. Inference of Biological Regulatory Networks:
Machine Learning Approaches ......................... 41
Florence d'Alche-Buc
Chapter 4. Transcriptional Networks ............................ 83
Francois Kepes
Chapter 5. Protein Interaction Networks ....................... 133
Kai Tan and Trey Ideker
Chapter 6. Metabolic Networks ................................. 163
David A. Fell
Chapter 7. Heterogeneous Molecular Networks ................... 199
Vincent Schäachter
Chapter 8. Evolution of Regulatory Networks ................... 257
Amelie Veron, Dion Whitehead and Erich
Bornberg-Bauer
Chapter 9. Complexity in Neuronal Networks .................... 291
Yves Fregnac, Michelle Rudolph, Andrew
P. Davison and Alain Destexhe
Chapter 10.Networks of the Immune System ...................... 341
Robin E. Callard and Jaroslav Stark
Chapter 11.A History of the Study of Ecological Networks ...... 365
Louis-Felix Bersier
Chapter 12.Dynamic Network Models of Ecological Diversity
Complexity, and Nonlinear Persistence .............. 423
Richard J. Williams and Neo D. Martinez
Chapter 13.Infection Transmission through Networks ............ 449
James S. Koopman
Index ......................................................... 507
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